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Please use this identifier to cite or link to this item: http://hdl.handle.net/1807/32571

Title: The Catalytic Aspartic Acid Shows a Role in Substrate Positioning in 5-methylthioribose Kinase
Authors: Dawson, Karen
Advisor: Howell, P. Lynne
Department: Biochemistry
Keywords: kinase
5-methylthioribose
methionine recycling
enzyme mechanism
Issue Date: 25-Jul-2012
Abstract: Methionine is involved in many cellular processes, several of which produce a feedback inhibitor. 5-methylthioribose (MTR) kinase, one protein involved in the removal of this inhibitor, has a protein kinase fold with conserved kinase motifs and several unique MTR binding motifs. Site-directed mutagenesis and characterization of the Bacillus subtilis enzyme was performed to probe the role of one motif. Active site D233 mutants show an activity profile similar to other protein kinase-like enzymes, suggesting a common mechanism that does not require a catalytic acid. An ordered sequential binding mechanism, with nucleotide binding first, was seen in wild type MTR kinase. Binding studies of the mutant proteins suggest that hydrogen bonding is important for MTR binding. The structures of the mutant proteins also show more differences in MTR binding than nucleotide binding. Overall, D233 is important for increasing the nucleophilicity of MTR, and ensuring its correct position in the active site.
URI: http://hdl.handle.net/1807/32571
Appears in Collections:Master

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